STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02340Damage-inducible protein DinB; Derived by automated computational analysis using gene prediction method: Protein Homology (187 aa)    
Predicted Functional Partners:
ybgC
4-hydroxybenzoyl-CoA thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.999
CN09_02335
Dna mismatch repair protein mutt; Belongs to the Nudix hydrolase family
       0.948
ruvB
Atp-dependent dna helicase ruvb; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing
       0.904
CN09_02330
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.825
CN09_02805
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.713
CN09_20820
2-keto-4-pentenoate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.572
ruvA
Atp-dependent dna helicase ruva; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB
       0.568
CN09_02310
Holliday junction resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.510
CN09_02315
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.510
CN09_32755
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.494
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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