STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02445Heat resistant agglutinin 1 protein; Derived by automated computational analysis using gene prediction method: Protein Homology (276 aa)    
Predicted Functional Partners:
CN09_16990
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.739
CN09_13505
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.726
CN09_01855
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.722
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family
  
    0.709
CN09_27580
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.701
CN09_02935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.679
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.679
CN09_04280
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.677
CN09_10920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.638
CN09_07045
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.626
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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