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CN09_02570 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02570" - Lipoprotein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02570Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the nlpA lipoprotein family (278 aa)    
Predicted Functional Partners:
CN09_02560
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (218 aa)
 
  0.991
CN09_32635
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (217 aa)
 
  0.979
CN09_02565
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (361 aa)
 
  0.973
CN09_32640
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (384 aa)
 
  0.942
CN09_31860
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial solute-binding protein 3 family (269 aa)
   
 
  0.527
CN09_02575
Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
              0.481
CN09_31940
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family (321 aa)
   
   
  0.427
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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