CN09_02695 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_02695

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+ (82 aa)

Predicted Functional Partners:

CN09_02705

0.766

CN09_02700

0.682

CN09_10280

0.585

CN09_04545

0.539

CN09_02710

0.523

CN09_25560

0.486

CN09_34310

0.474

CN09_26290

0.472

CN09_03180

0.463

CN09_01380

0.457

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Textmining

Cooccurrence

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01380	CN09_02695	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.457
CN09_01380	CN09_03180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.606
CN09_01380	CN09_04545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.495
CN09_01380	CN09_10280	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.618
CN09_01380	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.528
CN09_02695	CN09_01380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.457
CN09_02695	CN09_02700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.682
CN09_02695	CN09_02705	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.766
CN09_02695	CN09_02710	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.523
CN09_02695	CN09_03180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.463
CN09_02695	CN09_04545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.539
CN09_02695	CN09_10280	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.585
CN09_02695	CN09_25560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.486
CN09_02695	CN09_26290	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.472
CN09_02695	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.474
CN09_02700	CN09_02695	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.682
CN09_02700	CN09_02705	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.745
CN09_02705	CN09_02695	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.766
CN09_02705	CN09_02700	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+	0.745
CN09_02705	CN09_02710	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.754