CN09_02695 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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Score

CN09_02695

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+ (82 aa)

Predicted Functional Partners:

CN09_02705

0.766

CN09_02700

0.682

CN09_10280

0.585

CN09_04545

0.539

CN09_02710

0.523

CN09_25560

0.486

CN09_34310

0.474

CN09_26290

0.472

CN09_03180

0.463

CN09_01380

0.457

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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node1	node2	node1 annotation	node2 annotation	score
CN09_01380	CN09_02695	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.457
CN09_01380	CN09_03180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.606
CN09_01380	CN09_04545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.495
CN09_01380	CN09_10280	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.618
CN09_01380	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.528
CN09_02695	CN09_01380	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.457
CN09_02695	CN09_02700	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.682
CN09_02695	CN09_02705	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.766
CN09_02695	CN09_02710	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.523
CN09_02695	CN09_03180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.463
CN09_02695	CN09_04545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.539
CN09_02695	CN09_10280	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.585
CN09_02695	CN09_25560	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.486
CN09_02695	CN09_26290	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.472
CN09_02695	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.474
CN09_02700	CN09_02695	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.682
CN09_02700	CN09_02705	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.745
CN09_02705	CN09_02695	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.766
CN09_02705	CN09_02700	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- GeneMarkS+	0.745
CN09_02705	CN09_02710	Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.754