STRINGSTRING
CN09_02760 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02760" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02760Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (328 aa)    
Predicted Functional Partners:
CN09_02765
2-hydroxy-3-oxopropionate reductase; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
          0.893
CN09_02770
Dihydroxy-acid dehydratase; Catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the IlvD/Edd family (594 aa)
 
          0.878
CN09_24240
Aldolase; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)
 
 
  0.723
CN09_24245
Serine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (426 aa)
 
          0.691
CN09_21160
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
          0.582
CN09_24255
3-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (307 aa)
 
          0.577
CN09_21170
3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family (258 aa)
 
 
  0.570
CN09_02775
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (612 aa)
              0.509
CN09_01295
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (243 aa)
 
 
  0.504
CN09_23850
Fumarylacetoacetate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (380 aa)
 
     
  0.493
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (7%) [HD]