CN09_02830 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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white nodes:
second shell of interactors

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

CN09_02830

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)

Predicted Functional Partners:

CN09_12955

0.730

CN09_08155

0.728

CN09_04260

0.722

CN09_08320

0.717

CN09_34310

0.715

CN09_15710

0.715

CN09_12660

0.712

CN09_16135

0.699

CN09_04265

0.696

CN09_15055

0.682

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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Coexpression

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node1	node2	node1 annotation	node2 annotation	score
CN09_02830	CN09_04260	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.722
CN09_02830	CN09_04265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.696
CN09_02830	CN09_08155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.728
CN09_02830	CN09_08320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.717
CN09_02830	CN09_12660	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.712
CN09_02830	CN09_12955	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.730
CN09_02830	CN09_15055	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.682
CN09_02830	CN09_15710	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology	0.715
CN09_02830	CN09_16135	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.699
CN09_02830	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.715
CN09_04260	CN09_02830	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.722
CN09_04260	CN09_04265	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.591
CN09_04260	CN09_08155	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.748
CN09_04260	CN09_08320	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.630
CN09_04260	CN09_12660	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.592
CN09_04260	CN09_12955	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.723
CN09_04260	CN09_15055	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.639
CN09_04260	CN09_15710	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method- Protein Homology	0.741
CN09_04260	CN09_16135	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.628
CN09_04260	CN09_34310	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.697