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CN09_02900 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02900" - Creatininase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02900Creatininase; Derived by automated computational analysis using gene prediction method- Protein Homology (265 aa)    
Predicted Functional Partners:
CN09_02870
FAD-linked oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (469 aa)
          0.829
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.817
CN09_02875
Cytosine deaminase; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
          0.757
CN09_02890
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (338 aa)
 
          0.683
CN09_02880
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (288 aa)
 
          0.635
CN09_02885
Nitrate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (274 aa)
 
          0.600
CN09_02865
NAD(P)H dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (193 aa)
 
          0.563
CN09_01080
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (564 aa)
 
          0.505
CN09_02840
Endoribonuclease L-PSP; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
 
          0.443
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the mannose-6-phosphate isomerase type 2 family (475 aa)
              0.439
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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