STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02925GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology (283 aa)    
Predicted Functional Partners:
CN09_25735
Asp/Glu/hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
CN09_10210
Cellulose biosynthesis protein CelD; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.706
CN09_21505
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.645
puuE
Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_28965
N-formimino-L-glutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.572
CN09_02920
Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.565
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
   
   0.526
CN09_25720
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.495
CN09_30890
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.441
CN09_25730
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.439
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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