STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02960Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (388 aa)    
Predicted Functional Partners:
aqpZ
Porin; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity
   
 
 0.999
CN09_11985
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.994
CN09_29910
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.990
CN09_10940
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.989
CN09_14780
Calcium-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
    
 0.989
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP
   
 0.983
CN09_06315
Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.975
CN09_09380
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.973
CN09_18560
Lactate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
   
 0.973
CN09_22470
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 
 0.973
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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