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CN09_02995 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_02995" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
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[Homology]
Score
CN09_02995Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (91 aa)    
Predicted Functional Partners:
CN09_02980
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
 
          0.837
CN09_16315
Inositol monophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (79 aa)
   
          0.764
CN09_02970
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
   
          0.752
CN09_15665
Flagellar basal body rod modification protein FlgD; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
              0.744
CN09_15640
Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method- Protein Homology (425 aa)
              0.744
CN09_15490
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation (179 aa)
              0.744
CN09_15485
Flagellar motor switch protein FliG; Derived by automated computational analysis using gene prediction method- Protein Homology (347 aa)
              0.744
CN09_15455
Flagellar M-ring protein; The M ring may be actively involved in energy transduction (559 aa)
              0.744
mnmA
tRNA-specific 2-thiouridylase MnmA; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34 (399 aa)
              0.744
ligA
DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (717 aa)
              0.708
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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