STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_02995DUF1153 domain-containing protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (91 aa)    
Predicted Functional Partners:
CN09_02980
Two-component system, cell cycle response regulator ctra; Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.845
CN09_16315
Inositol monophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.764
mnmA
Trna 2-thiouridylase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34
       0.756
fliF
Flagellar m-ring protein flif; The M ring may be actively involved in energy transduction
       0.756
fliG
Flagellar motor switch protein FliG; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
fliN
FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
       0.756
CN09_15640
Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
flgD
Flagellar basal body rod modification protein FlgD; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.756
CN09_02970
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.752
ligA
Nad-dependent dna ligase liga; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
       0.714
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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