CN09_03020 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03020

Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method- Protein Homology (184 aa)

Predicted Functional Partners:

CN09_03015

0.984

CN09_03010

0.976

CN09_03005

0.960

CN09_33905

0.885

CN09_01655

0.841

CN09_33910

0.839

CN09_03025

0.816

CN09_33915

0.780

CN09_01640

0.714

CN09_01650

0.685

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 5

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_01640	CN09_01650	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_01640	CN09_01655	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.994
CN09_01640	CN09_03010	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_01640	CN09_03015	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.868
CN09_01640	CN09_03020	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method- Protein Homology	0.714
CN09_01640	CN09_33905	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.868
CN09_01640	CN09_33910	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.851
CN09_01650	CN09_01640	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_01650	CN09_01655	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.990
CN09_01650	CN09_03005	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.864
CN09_01650	CN09_03015	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.928
CN09_01650	CN09_03020	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method- Protein Homology	0.685
CN09_01650	CN09_03025	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Glycine cleavage system protein T; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.753
CN09_01650	CN09_33905	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	0.929
CN09_01650	CN09_33915	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.863
CN09_01655	CN09_01640	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.994
CN09_01655	CN09_01650	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.990
CN09_01655	CN09_03005	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.868
CN09_01655	CN09_03010	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method- Protein Homology	0.912
CN09_01655	CN09_03020	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the GcvT family	Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method- Protein Homology	0.841