STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03045ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology (242 aa)    
Predicted Functional Partners:
CN09_03040
Branched-chain amino acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 
0.991
CN09_03050
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.991
livM
Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family
  
 0.988
CN09_03030
Branched-chain amino acid transporter permease subunit livh; Belongs to the binding-protein-dependent transport system permease family
  
 0.984
CN09_03055
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.978
CN09_24625
Amino acid abc transporter; Belongs to the binding-protein-dependent transport system permease family
  
 0.929
CN09_24620
Amino acid abc transporter; Belongs to the binding-protein-dependent transport system permease family
  
 0.902
CN09_26825
Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family
  
 0.878
CN09_21290
Abc transporter permease; Belongs to the binding-protein-dependent transport system permease family
  
 0.877
CN09_32845
Amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.862
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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