CN09_03150 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03150

Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (396 aa)

Predicted Functional Partners:

CN09_03145

0.989

CN09_28575

0.701

macB

0.644

CN09_34005

0.549

CN09_17880

0.538

CN09_16650

0.531

CN09_04870

0.522

CN09_15450

0.519

CN09_11870

0.512

CN09_08500

0.510

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_03145	CN09_03150	CN09_03145	CN09_03150	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.989
CN09_03145	CN09_34005	CN09_03145	CN09_34005	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	Nodulation protein NodT; Derived by automated computational analysis using gene prediction method: Protein Homology	0.484
CN09_03150	CN09_03145	CN09_03150	CN09_03145	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	0.989
CN09_03150	CN09_04870	CN09_03150	CN09_04870	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.522
CN09_03150	CN09_08500	CN09_03150	CN09_08500	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.510
CN09_03150	CN09_11870	CN09_03150	CN09_11870	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.512
CN09_03150	CN09_15450	CN09_03150	CN09_15450	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.519
CN09_03150	CN09_16650	CN09_03150	CN09_16650	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.531
CN09_03150	CN09_17880	CN09_03150	CN09_17880	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.538
CN09_03150	CN09_28575	CN09_03150	CN09_28575	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	ACR/RND family transmembrane transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family	0.701
CN09_03150	CN09_34005	CN09_03150	CN09_34005	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Nodulation protein NodT; Derived by automated computational analysis using gene prediction method: Protein Homology	0.549
CN09_03150	macB	CN09_03150	CN09_25550	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides	0.644
CN09_04870	CN09_03150	CN09_04870	CN09_03150	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.522
CN09_04870	CN09_08500	CN09_04870	CN09_08500	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.777
CN09_04870	CN09_11870	CN09_04870	CN09_11870	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.757
CN09_04870	CN09_15450	CN09_04870	CN09_15450	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.775
CN09_04870	CN09_16650	CN09_04870	CN09_16650	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.763
CN09_04870	CN09_17880	CN09_04870	CN09_17880	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.783
CN09_08500	CN09_03150	CN09_08500	CN09_03150	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	0.510
CN09_08500	CN09_04870	CN09_08500	CN09_04870	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.777

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About