STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03150Hemolysin secretion protein d; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (396 aa)    
Predicted Functional Partners:
CN09_03145
Abc transporter permease; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
 0.991
macB
Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides
 
 0.989
CN09_34005
Nodulation protein NodT; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.831
CN09_24930
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.777
CN09_25225
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.762
CN09_25230
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.762
lolD
Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner
  
 0.759
CN09_25235
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
 0.759
CN09_28575
Acr/rnd family transmembrane transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
 0.743
CN09_29335
Rnd transporter; Efflux pump membrane transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
 0.569
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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