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CN09_03170 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03170" - Nitrate ABC transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_03170Nitrate ABC transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (377 aa)    
Predicted Functional Partners:
CN09_03185
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (263 aa)
     
  0.967
CN09_03165
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (322 aa)
 
     
  0.947
CN09_03175
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
       
0.947
CN09_03180
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
              0.874
CN09_18410
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (324 aa)
 
     
  0.740
CN09_01000
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (344 aa)
 
     
  0.689
CN09_01005
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (270 aa)
     
  0.684
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.671
CN09_03190
Cupin; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)
              0.628
CN09_18420
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (277 aa)
     
  0.618
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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