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CN09_03205 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03205" - TetR family transcriptional regulator in Agrobacterium rhizogenes
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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CN09_03205TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)    
Predicted Functional Partners:
CN09_03175
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
          0.761
rutA
Pyrimidine monooxygenase RutA; Catalyzes the pyrimidine ring opening between N-3 and C- 4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate (363 aa)
 
     
  0.692
CN09_03165
Nitrate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (322 aa)
 
          0.654
CN09_03200
Allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; Derived by automated computational analysis using gene prediction method- Protein Homology (417 aa)
 
          0.653
CN09_03195
Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method- Protein Homology (484 aa)
 
     
  0.627
CN09_03705
Guanine deaminase; Catalyzes the deamination of guanine; Derived by automated computational analysis using gene prediction method- Protein Homology (435 aa)
 
          0.624
rutC
Putative aminoacrylate peracid reductase RutC; May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation (129 aa)
 
          0.618
CN09_03210
Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method- Protein Homology (437 aa)
 
     
  0.606
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate (209 aa)
         
  0.585
rutB
Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB; In vivo, quickly hydrolyzes the ureidoacrylate peracid to avoid toxicity, but can also hydrolyzes ureidoacrylate that is formed spontaneously from ureidoacrylate peracid. One of the products of hydrolysis, carbamate, hydrolyzes spontaneously, thereby releasing one of the pyrimidine rings nitrogen atoms as ammonia and one of its carbons as CO2; Belongs to the isochorismatase family. RutB subfamily (246 aa)
 
          0.566
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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