STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemPMonooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology (57 aa)    
Predicted Functional Partners:
CN09_03265
Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.964
hmuV
Iron abc transporter; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
 
   
 0.955
CN09_03260
Hemin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.954
CN09_03275
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.931
CN09_03255
Iron abc transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
     
 0.904
CN09_03280
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.863
CN09_03975
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.732
bfr
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex
     
 0.706
CN09_03240
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.692
tolR
Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.647
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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