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CN09_03325 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03325" - Sugar ABC transporter substrate-binding protein in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03325Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (422 aa)    
Predicted Functional Partners:
CN09_22160
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method- Protein Homology (713 aa)
              0.937
CN09_03330
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (300 aa)
 
 
  0.920
CN09_03335
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
 
 
  0.902
CN09_01695
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties (820 aa)
   
   
  0.805
CN09_01670
Glycogen debranching protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the glycosyl hydrolase 13 family (657 aa)
         
  0.729
CN09_12645
UDP-N-acetyl-D-galactosamine dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family (427 aa)
              0.652
CN09_03340
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (362 aa)
   
 
  0.645
CN09_00450
Beta-mannosidase; Derived by automated computational analysis using gene prediction method- Protein Homology (823 aa)
 
     
  0.637
CN09_22195
General secretion pathway protein GspE; Derived by automated computational analysis using gene prediction method- Protein Homology (538 aa)
         
  0.618
CN09_05660
Mechanosensitive ion channel protein; Derived by automated computational analysis using gene prediction method- Protein Homology (866 aa)
              0.615
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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