CN09_03345 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03345

TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (187 aa)

Predicted Functional Partners:

CN09_03350

0.939

CN09_03340

0.747

CN09_03335

0.569

CN09_03330

0.561

CN09_03360

0.487

CN09_03355

0.467

CN09_03325

0.421

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_03325	CN09_03330	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.920
CN09_03325	CN09_03335	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.902
CN09_03325	CN09_03340	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.645
CN09_03325	CN09_03345	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.421
CN09_03325	CN09_03350	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.425
CN09_03325	CN09_03355	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.455
CN09_03325	CN09_03360	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.409
CN09_03330	CN09_03325	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.920
CN09_03330	CN09_03335	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_03330	CN09_03340	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.803
CN09_03330	CN09_03345	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.561
CN09_03330	CN09_03350	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.543
CN09_03335	CN09_03325	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.902
CN09_03335	CN09_03330	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.972
CN09_03335	CN09_03340	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	0.813
CN09_03335	CN09_03345	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology	0.569
CN09_03335	CN09_03350	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.540
CN09_03335	CN09_03355	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.400
CN09_03340	CN09_03325	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.645
CN09_03340	CN09_03330	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology	0.803