STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03350Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (113 aa)    
Predicted Functional Partners:
CN09_03345
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.943
sugE
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.914
typA
GTP-binding protein TypA; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.731
CN09_03340
Abc transporter atp-binding protein; Belongs to the ABC transporter superfamily
       0.709
trxB
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family
       0.644
CN09_17655
DNA mismatch repair protein MutS; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_06555
Belongs to the isocitrate and isopropylmalate dehydrogenases family
       0.621
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
       0.602
CN09_06820
Uncharacterized protein; Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.600
serS
Serine--trna ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec)
       0.598
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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