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CN09_03450 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03450" - Sulfatase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03450Sulfatase; Derived by automated computational analysis using gene prediction method- Protein Homology (585 aa)    
Predicted Functional Partners:
CN09_06085
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid (130 aa)
 
   
  0.955
CN09_11865
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
   
   
  0.931
CN09_22360
Urea carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (1178 aa)
              0.886
CN09_20105
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (446 aa)
 
 
  0.808
CN09_13885
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (128 aa)
   
        0.805
CN09_06300
Cation tolerance protein CutA; Derived by automated computational analysis using gene prediction method- Protein Homology (642 aa)
 
 
 
  0.800
CN09_24355
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (422 aa)
   
 
  0.787
CN09_28690
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
 
 
  0.777
CN09_32965
Acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method- Protein Homology (533 aa)
              0.719
CN09_03455
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (136 aa)
   
   
  0.719
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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