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CN09_03470 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03470" - Major facilitator transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03470Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (466 aa)    
Predicted Functional Partners:
CN09_03475
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (331 aa)
 
 
 
  0.758
CN09_20720
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (416 aa)
 
     
  0.636
CN09_12385
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (472 aa)
   
          0.569
CN09_27845
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (403 aa)
 
 
      0.519
CN09_03465
Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology (125 aa)
         
  0.494
CN09_02520
Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
   
          0.459
CN09_10175
MFS transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
 
     
  0.455
CN09_07395
Lactoylglutathione lyase; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
 
     
  0.452
CN09_28335
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.430
CN09_03460
Phosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (258 aa)
 
     
  0.410
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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