CN09_03470 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03470

Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology (466 aa)

Predicted Functional Partners:

mntH

0.959

pepN

0.956

CN09_24085

0.956

CN09_32650

0.956

CN09_00410

0.955

CN09_01870

0.955

CN09_02535

0.955

hflK

0.955

CN09_05390

0.955

CN09_12010

0.955

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00410	CN09_01870	CN09_00410	CN09_01870	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.959
CN09_00410	CN09_02535	CN09_00410	CN09_02535	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.959
CN09_00410	CN09_03470	CN09_00410	CN09_03470	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_00410	CN09_05390	CN09_00410	CN09_05390	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; HflC and HflK could regulate a protease	0.959
CN09_00410	CN09_24085	CN09_00410	CN09_24085	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	Cardiolipin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.961
CN09_00410	CN09_32650	CN09_00410	CN09_32650	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.956
CN09_00410	hflK	CN09_00410	CN09_05385	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; HflC and HflK could encode or regulate a protease	0.959
CN09_01870	CN09_00410	CN09_01870	CN09_00410	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.959
CN09_01870	CN09_03470	CN09_01870	CN09_03470	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_01870	CN09_05390	CN09_01870	CN09_05390	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Membrane protein; HflC and HflK could regulate a protease	0.458
CN09_01870	CN09_12010	CN09_01870	CN09_12010	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.959
CN09_01870	CN09_24085	CN09_01870	CN09_24085	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cardiolipin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_01870	CN09_32650	CN09_01870	CN09_32650	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_01870	mntH	CN09_01870	CN09_29030	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Manganese transporter; H(+)-stimulated, divalent metal cation uptake system	0.950
CN09_02535	CN09_00410	CN09_02535	CN09_00410	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.959
CN09_02535	CN09_03470	CN09_02535	CN09_03470	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_02535	CN09_12010	CN09_02535	CN09_12010	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology	0.959
CN09_02535	CN09_24085	CN09_02535	CN09_24085	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Cardiolipin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_02535	CN09_32650	CN09_02535	CN09_32650	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.955
CN09_02535	mntH	CN09_02535	CN09_29030	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Manganese transporter; H(+)-stimulated, divalent metal cation uptake system	0.950

page 1 of 4

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About