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CN09_03660 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03660" - D-amino acid oxidase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_03660D-amino acid oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology (394 aa)    
Predicted Functional Partners:
CN09_03655
5-methylaminomethyl-2-thiouridine methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.929
CN09_23670
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
          0.837
CN09_03665
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (235 aa)
 
          0.680
CN09_17880
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (77 aa)
   
          0.660
CN09_08240
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
   
          0.651
CN09_15450
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.645
CN09_16650
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
   
          0.639
CN09_15750
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)
   
          0.633
CN09_04870
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
          0.602
CN09_08500
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method- Protein Homology (119 aa)
   
          0.600
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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