glpK protein (Agrobacterium rhizogenes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

glpK

Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate (498 aa)

Predicted Functional Partners:

gltB

0.999

CN09_27915

0.985

CN09_33620

0.985

CN09_01550

0.982

CN09_06315

0.976

CN09_15795

0.976

CN09_21965

0.976

CN09_22065

0.976

CN09_01525

0.975

lysA

0.975

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01525	CN09_06315	CN09_01525	CN09_06315	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.962
CN09_01525	CN09_15795	CN09_01525	CN09_15795	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.962
CN09_01525	CN09_21965	CN09_01525	CN09_21965	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.962
CN09_01525	CN09_22065	CN09_01525	CN09_22065	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.962
CN09_01525	glpK	CN09_01525	CN09_03750	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	0.975
CN09_01525	gltB	CN09_01525	CN09_01825	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.825
CN09_01550	CN09_06315	CN09_01550	CN09_06315	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_01550	CN09_15795	CN09_01550	CN09_15795	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_01550	CN09_21965	CN09_01550	CN09_21965	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_01550	CN09_22065	CN09_01550	CN09_22065	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_01550	CN09_27915	CN09_01550	CN09_27915	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.620
CN09_01550	CN09_33620	CN09_01550	CN09_33620	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.891
CN09_01550	glpK	CN09_01550	CN09_03750	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	0.982
CN09_06315	CN09_01525	CN09_06315	CN09_01525	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	0.962
CN09_06315	CN09_01550	CN09_06315	CN09_01550	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.980
CN09_06315	CN09_27915	CN09_06315	CN09_27915	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.960
CN09_06315	CN09_33620	CN09_06315	CN09_33620	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.958
CN09_06315	glpK	CN09_06315	CN09_03750	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate	0.976
CN09_06315	lysA	CN09_06315	CN09_20730	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine	0.962
CN09_15795	CN09_01525	CN09_15795	CN09_01525	Ankyrin; Derived by automated computational analysis using gene prediction method: Protein Homology	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family	0.962

page 1 of 4

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2022

Credits

Access

Info

About