CN09_03770 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03770

Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology (124 aa)

Predicted Functional Partners:

CN09_03775

0.984

CN09_03780

0.891

CN09_11675

0.862

CN09_02125

0.842

CN09_00480

0.827

CN09_11670

0.775

CN09_11665

0.769

CN09_03765

0.656

CN09_00405

0.490

CN09_12225

0.475

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

page 1 of 4

Network

Neighborhood

Textmining

Fusion

Experiments

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
CN09_00405	CN09_00480	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.447
CN09_00405	CN09_02125	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	0.419
CN09_00405	CN09_03770	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.490
CN09_00405	CN09_03775	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.442
CN09_00405	CN09_11670	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.408
CN09_00405	CN09_11675	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	0.440
CN09_00480	CN09_00405	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.447
CN09_00480	CN09_02125	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	0.479
CN09_00480	CN09_03770	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.827
CN09_00480	CN09_03775	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.516
CN09_00480	CN09_03780	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.573
CN09_00480	CN09_11675	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	0.456
CN09_00480	CN09_12225	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.473
CN09_02125	CN09_00405	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.419
CN09_02125	CN09_00480	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.479
CN09_02125	CN09_03770	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.842
CN09_02125	CN09_03780	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.421
CN09_02125	CN09_11665	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.836
CN09_02125	CN09_11670	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology	0.837
CN09_02125	CN09_12225	RNA polymerase sigma70 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology	0.516