CN09_03780 protein (Agrobacterium rhizogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CN09_03780

Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology (156 aa)

Predicted Functional Partners:

CN09_03775

0.999

CN09_06140

0.892

CN09_03770

0.891

CN09_15850

0.833

CN09_04580

0.803

CN09_13935

0.748

ribB

0.712

CN09_12220

0.652

CN09_00480

0.573

CN09_06145

0.527

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_00480	CN09_03770	CN09_00480	CN09_03770	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.827
CN09_00480	CN09_03775	CN09_00480	CN09_03775	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.516
CN09_00480	CN09_03780	CN09_00480	CN09_03780	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_00480	CN09_04580	CN09_00480	CN09_04580	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.793
CN09_00480	CN09_15850	CN09_00480	CN09_15850	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.565
CN09_03770	CN09_00480	CN09_03770	CN09_00480	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.827
CN09_03770	CN09_03775	CN09_03770	CN09_03775	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.984
CN09_03770	CN09_03780	CN09_03770	CN09_03780	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.891
CN09_03775	CN09_00480	CN09_03775	CN09_00480	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.516
CN09_03775	CN09_03770	CN09_03775	CN09_03770	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.984
CN09_03775	CN09_03780	CN09_03775	CN09_03780	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.999
CN09_03775	CN09_15850	CN09_03775	CN09_15850	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.412
CN09_03780	CN09_00480	CN09_03780	CN09_00480	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.573
CN09_03780	CN09_03770	CN09_03780	CN09_03770	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.891
CN09_03780	CN09_03775	CN09_03780	CN09_03775	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily	0.999
CN09_03780	CN09_04580	CN09_03780	CN09_04580	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	RNA signal recognition particle 4.5S RNA; Derived by automated computational analysis using gene prediction method- Protein Homology	0.803
CN09_03780	CN09_06140	CN09_03780	CN09_06140	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology	0.892
CN09_03780	CN09_06145	CN09_03780	CN09_06145	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.527
CN09_03780	CN09_12220	CN09_03780	CN09_12220	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	Glyoxalase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.652
CN09_03780	CN09_13935	CN09_03780	CN09_13935	Polyketide cyclase; Derived by automated computational analysis using gene prediction method- Protein Homology	ArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ArsC family	0.748

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About