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CN09_03820 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_03820" - Membrane protein in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03820Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)    
Predicted Functional Partners:
der
GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis (475 aa)
 
          0.999
CN09_03815
NnrU family protein; Derived by automated computational analysis using gene prediction method- Protein Homology (193 aa)
              0.878
lptD
LPS-assembly protein LptD; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family (791 aa)
 
          0.755
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate; Belongs to the PanB family (273 aa)
              0.744
CN09_10335
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
   
     
  0.724
CN09_02970
Histidine phosphotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (215 aa)
   
     
  0.708
CN09_31930
Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method- Protein Homology (1172 aa)
              0.697
CN09_12335
Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; Derived by automated computational analysis using gene prediction method- Protein Homology (1157 aa)
              0.697
CN09_17570
Recombinase RecB; Derived by automated computational analysis using gene prediction method- Protein Homology (1063 aa)
   
          0.694
CN09_27510
Cell division protein FtsX; Derived by automated computational analysis using gene prediction method- Protein Homology (348 aa)
   
          0.689
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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