STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_03830
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (146 aa)
Predicted Functional Partners:
CN09_12245
Organic hydroperoxide resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
0.872
CN09_32750
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family
0.604
CN09_03835
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
a tab-delimited file describing the names, domains and annotated functions of the network proteins
Browse interactions in tabular form:
node1
node2
node1 annotation
node2 annotation
score
CN09_03830
CN09_03835
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
0.520
CN09_03830
CN09_12245
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
Organic hydroperoxide resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
0.872
CN09_03830
CN09_32750
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family
0.604
CN09_03835
CN09_03830
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
0.520
CN09_12245
CN09_03830
Organic hydroperoxide resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
0.872
CN09_32750
CN09_03830
Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
0.604
Network Stats
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Functional enrichments in your networkNote: some enrichments may be expected here (why?) explain columns
Enrichment analysis is still ongoing, please wait ...
Statistical background
For the above enrichment analysis, the following statistical background is assumed: