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CN09_04070 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04070" - Metallophosphatase in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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[Homology]
Score
CN09_04070Metallophosphatase; Derived by automated computational analysis using gene prediction method- Protein Homology (301 aa)    
Predicted Functional Partners:
CN09_04075
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (163 aa)
 
          0.897
CN09_17560
Chlorosome protein; Derived by automated computational analysis using gene prediction method- Protein Homology (503 aa)
 
          0.867
cpdB
Periplasmic enzyme; functions during ribonucleic acid degradation; 2’,3’-cyclic nucleotides are first converted to 3’-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the 5’-nucleotidase family (662 aa)
         
  0.844
CN09_01885
5’-nucleotidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the 5’-nucleotidase family (681 aa)
         
  0.844
CN09_07995
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (81 aa)
 
          0.763
CN09_02985
Flagellar export protein FliJ; Derived by automated computational analysis using gene prediction method- Protein Homology (118 aa)
   
          0.762
CN09_13785
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (327 aa)
 
        0.738
CN09_07115
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (376 aa)
   
          0.732
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family (367 aa)
     
      0.726
CN09_02005
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (162 aa)
   
          0.718
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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