STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04090dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology (663 aa)    
Predicted Functional Partners:
phoU
Phou family transcriptional regulator; Plays a role in the regulation of phosphate uptake
  
    0.838
pstS
Phosphate abc transporter substrate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import
  
  
 0.825
tatC
Preprotein translocase subunit tatc; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides
  
  
 0.821
CN09_15100
Phosphonate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.804
tatB
Preprotein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation
  
  
 0.791
CN09_05605
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.780
phoB
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.757
CN09_01885
Belongs to the 5'-nucleotidase family
     
 0.652
CN09_01535
Cytochrome C peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
CN09_17955
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.644
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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