STRINGSTRING
CN09_04095 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04095" - Acetyltransferase in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04095Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (141 aa)    
Predicted Functional Partners:
CN09_04110
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (306 aa)
              0.852
CN09_04100
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (690 aa)
              0.850
CN09_04105
RNA-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (941 aa)
              0.847
CN09_04115
ATPase AAA; Derived by automated computational analysis using gene prediction method- Protein Homology (337 aa)
              0.772
CN09_05105
GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (178 aa)
 
     
  0.559
CN09_04130
Poly(A) polymerase; Derived by automated computational analysis using gene prediction method- Protein Homology (418 aa)
         
  0.557
CN09_04125
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (211 aa)
              0.533
CN09_04120
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (207 aa)
              0.520
CN09_13760
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (173 aa)
   
          0.476
CN09_05510
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (174 aa)
   
          0.432
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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