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CN09_04280 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04280" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04280Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (293 aa)    
Predicted Functional Partners:
CN09_04285
Xaa-Pro dipeptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (383 aa)
 
          0.896
CN09_04290
Polyphenol oxidase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family (260 aa)
              0.866
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily (310 aa)
              0.831
CN09_04295
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (365 aa)
              0.789
CN09_02385
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (410 aa)
   
          0.771
CN09_06795
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1139 aa)
   
          0.769
CN09_11920
Peptidoglycan-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (280 aa)
   
          0.767
CN09_02935
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (766 aa)
   
          0.765
CN09_10445
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
   
          0.763
CN09_08320
Sporulation protein; Derived by automated computational analysis using gene prediction method- Protein Homology (929 aa)
   
          0.762
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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