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CN09_04325 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04325" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04325Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (193 aa)    
Predicted Functional Partners:
CN09_04330
ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)
              0.862
CN09_04335
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
              0.776
CN09_28370
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
 
   
  0.771
CN09_22610
Acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (566 aa)
   
   
  0.739
CN09_15170
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
   
   
  0.739
CN09_13095
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (205 aa)
   
   
  0.739
CN09_08420
Maltose acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (185 aa)
   
   
  0.739
valS
Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a "posttransfer" editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA-dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily (947 aa)
              0.652
CN09_04340
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
              0.590
CN09_17575
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the helicase family. UvrD subfamily (1187 aa)
              0.433
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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