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CN09_04330 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04330" - ATPase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04330ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology (459 aa)    
Predicted Functional Partners:
CN09_04335
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method- Protein Homology (233 aa)
 
 
  0.988
CN09_04340
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (158 aa)
         
  0.873
CN09_04325
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (193 aa)
              0.862
CN09_28440
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (227 aa)
 
 
  0.858
CN09_23015
Branched-chain-amino-acid aminotransferase; Catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; Derived by automated computational analysis using gene prediction method- Protein Homology (365 aa)
         
  0.746
CN09_01630
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bS21 family (70 aa)
              0.726
CN09_17530
Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (599 aa)
 
 
 
  0.720
CN09_17525
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (249 aa)
 
 
  0.681
CN09_14680
Cro/Cl family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (139 aa)
 
     
  0.664
CN09_28830
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
 
     
  0.640
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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