CN09_04350 protein (Agrobacterium rhizogenes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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textmining

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protein homology

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Score

CN09_04350

Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (212 aa)

Predicted Functional Partners:

putA

0.718

CN09_11975

0.706

CN09_16465

0.654

CN09_16960

0.652

CN09_10585

0.638

CN09_29415

0.627

CN09_04590

0.603

CN09_04345

0.585

CN09_04135

0.547

CN09_01615

0.538

Your Current Organism:

Agrobacterium rhizogenes

NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CN09_01615	CN09_04350	CN09_01615	CN09_04350	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.538
CN09_01615	CN09_04590	CN09_01615	CN09_04590	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.552
CN09_04135	CN09_04350	CN09_04135	CN09_04350	Small metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.547
CN09_04135	CN09_04590	CN09_04135	CN09_04590	Small metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.618
CN09_04135	CN09_10585	CN09_04135	CN09_10585	Small metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.732
CN09_04135	CN09_29415	CN09_04135	CN09_29415	Small metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_04345	CN09_04350	CN09_04345	CN09_04350	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.585
CN09_04350	CN09_01615	CN09_04350	CN09_01615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.538
CN09_04350	CN09_04135	CN09_04350	CN09_04135	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Small metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.547
CN09_04350	CN09_04345	CN09_04350	CN09_04345	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.585
CN09_04350	CN09_04590	CN09_04350	CN09_04590	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603
CN09_04350	CN09_10585	CN09_04350	CN09_10585	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Lipoprotein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.638
CN09_04350	CN09_11975	CN09_04350	CN09_11975	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; Derived by automated computational analysis using gene prediction method- Protein Homology	0.706
CN09_04350	CN09_16465	CN09_04350	CN09_16465	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.654
CN09_04350	CN09_16960	CN09_04350	CN09_16960	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.652
CN09_04350	CN09_29415	CN09_04350	CN09_29415	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.627
CN09_04350	putA	CN09_04350	CN09_23575	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family	0.718
CN09_04590	CN09_01615	CN09_04590	CN09_01615	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Histidine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology	0.552
CN09_04590	CN09_04135	CN09_04590	CN09_04135	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Small metal-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.618
CN09_04590	CN09_04350	CN09_04590	CN09_04350	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology	0.603

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