STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04735Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology (312 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.905
CN09_04730
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.878
CN09_04725
Polysaccharide biosynthesis protein GumK; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.699
cpsB
mannose-1-phosphate guanyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family
     
 0.657
CN09_04740
Hypothetical protein; Belongs to the UPF0303 family
       0.650
pheT
Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily
       0.632
CN09_23675
Chain-length determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.608
CN09_24525
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.548
CN09_25560
Hypothetical protein; Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.547
CN09_15710
Succinoglycan biosynthesis protein exop; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.538
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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