STRINGSTRING
CN09_04765 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04765" - Sugar ABC transporter substrate-binding protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04765Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (419 aa)    
Predicted Functional Partners:
CN09_04770
ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
 
  0.966
CN09_04775
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
 
 
  0.966
CN09_04780
Oxidoreductase; Derived by automated computational analysis using gene prediction method- Protein Homology (354 aa)
 
     
  0.948
CN09_04755
Phage tail protein; Derived by automated computational analysis using gene prediction method- Protein Homology (254 aa)
 
 
 
  0.850
CN09_04760
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)
 
          0.814
CN09_29325
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family (385 aa)
 
     
  0.799
CN09_29320
Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
 
     
  0.782
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling (307 aa)
 
          0.778
CN09_26305
N-acetylglucosamine kinase; Derived by automated computational analysis using gene prediction method- Protein Homology (296 aa)
 
          0.707
CN09_04785
Glycerol-3-phosphate ABC transporter ATPase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ABC transporter superfamily (334 aa)
     
 
  0.592
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
Server load: low (12%) [HD]