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CN09_04795 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_04795" - Methyltransferase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04795Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)    
Predicted Functional Partners:
CN09_04800
Phosphonates metabolism transcriptional regulator PhnF; Derived by automated computational analysis using gene prediction method- Protein Homology (242 aa)
            0.925
CN09_03985
Anthranilate synthase; trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; Derived by automated computational analysis using gene prediction method- Protein Homology (729 aa)
   
 
  0.801
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
 
 
  0.793
CN09_20310
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (172 aa)
 
 
      0.766
CN09_27105
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (165 aa)
 
 
      0.764
CN09_33960
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (165 aa)
 
 
      0.762
CN09_05180
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (465 aa)
 
     
  0.757
CN09_04730
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method- Protein Homology (502 aa)
 
     
  0.725
CN09_09025
Metalloprotease; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
   
          0.721
CN09_06030
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (84 aa)
   
          0.720
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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