STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_04835RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (290 aa)    
Predicted Functional Partners:
CN09_04840
N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
    0.785
CN09_04850
Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family
 
     0.669
CN09_04855
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family
 
     0.575
CN09_18725
N-formylglutamate amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.545
CN09_04830
Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.528
CN09_04860
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.527
CN09_04820
Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.434
CN09_04825
Acriflavin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.434
CN09_11575
RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.429
CN09_04845
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology
     
 0.428
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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