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CN09_05195 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05195" - Major facilitator transporter in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05195Major facilitator transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (427 aa)    
Predicted Functional Partners:
CN09_01270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (109 aa)
   
   
  0.999
CN09_23790
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (501 aa)
   
   
  0.881
CN09_00175
Galactarate dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (507 aa)
   
   
  0.881
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose (108 aa)
   
   
  0.837
glk
Glucokinase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial glucokinase family (340 aa)
 
     
  0.825
CN09_29325
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the metallo-dependent hydrolases superfamily. NagA family (385 aa)
 
     
  0.796
CN09_01235
Amidohydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (278 aa)
   
   
  0.760
CN09_29320
Aminotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (343 aa)
         
  0.751
CN09_15770
6-phosphogluconolactonase; Derived by automated computational analysis using gene prediction method- Protein Homology (232 aa)
 
     
  0.736
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis (236 aa)
              0.726
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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