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CN09_05230 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05230" - Cell envelope biogenesis protein OmpA in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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[Homology]
Score
CN09_05230Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the ompA family (222 aa)    
Predicted Functional Partners:
CN09_15290
Hemagglutinin; Derived by automated computational analysis using gene prediction method- Protein Homology (1225 aa)
         
  0.876
rpmF
50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL32 family (61 aa)
 
      0.566
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (82 aa)
   
      0.566
CN09_09920
Multidrug ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (436 aa)
 
 
  0.565
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel (206 aa)
   
 
  0.522
CN09_05220
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella (337 aa)
         
  0.514
CN09_05215
Multidrug transporter AcrB; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family (1054 aa)
 
   
  0.498
rplI
50S ribosomal protein L9; Binds to the 23S rRNA (193 aa)
   
 
  0.486
rpmG
50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the bacterial ribosomal protein bL33 family (55 aa)
   
 
  0.483
rpsS
30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (92 aa)
   
 
  0.478
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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