STRINGSTRING
CN09_05280 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05280" - Uncharacterized protein in Agrobacterium rhizogenes
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05280Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (64 aa)    
Predicted Functional Partners:
CN09_05285
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (169 aa)
              0.907
CN09_05275
Arylsulfate sulfotransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (70 aa)
              0.878
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily (463 aa)
              0.744
CN09_02515
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (214 aa)
              0.741
CN09_03400
GCN5 family acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (220 aa)
              0.729
CN09_16650
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (203 aa)
   
          0.581
CN09_15750
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (137 aa)
   
          0.569
CN09_15450
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (129 aa)
   
          0.565
CN09_12205
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (130 aa)
   
          0.564
CN09_14155
Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method- Protein Homology (195 aa)
 
          0.544
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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