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CN09_05300 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05300" - Membrane protein in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
CN09_05300Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (150 aa)    
Predicted Functional Partners:
CN09_05305
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (175 aa)
 
        0.925
CN09_05310
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (188 aa)
 
          0.899
CN09_24870
Preprotein translocase subunit YidC; Derived by automated computational analysis using gene prediction method- Protein Homology (319 aa)
 
          0.690
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.532
CN09_11980
Acetyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (168 aa)
 
        0.531
CN09_01330
Spermidine/putrescine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (386 aa)
 
          0.518
CN09_20250
Nickel/cobalt efflux system; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family (399 aa)
   
          0.478
CN09_23635
Putative nickel-responsive regulator; Transcriptional regulator (145 aa)
 
          0.473
CN09_30645
Universal stress protein; Derived by automated computational analysis using gene prediction method- Protein Homology (142 aa)
 
        0.451
CN09_29895
Urease-associated protein; Derived by automated computational analysis using gene prediction method- Protein Homology (135 aa)
 
          0.412
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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