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CN09_05320 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05320" - 3-hydroxyisobutyrate dehydrogenase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_053203-hydroxyisobutyrate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (294 aa)    
Predicted Functional Partners:
CN09_05315
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (400 aa)
 
     
  0.973
CN09_05350
GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method- Protein Homology (244 aa)
 
          0.949
CN09_27090
2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
 
     
  0.940
CN09_05360
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (223 aa)
     
  0.909
CN09_05365
4-oxalomesaconate tautomerase; Derived by automated computational analysis using gene prediction method- Protein Homology (351 aa)
 
     
  0.874
CN09_30980
S-adenosylmethionine- 2-demethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (224 aa)
     
  0.854
CN09_24020
Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method- Protein Homology (390 aa)
 
     
  0.838
CN09_27080
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (404 aa)
 
     
  0.826
CN09_05355
Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method- Protein Homology (321 aa)
 
     
  0.814
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method- Protein Homology (1107 aa)
   
   
  0.798
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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