STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_053756-phosphogluconate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology (278 aa)    
Predicted Functional Partners:
CN09_03380
2-oxoisovalerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology
  
  
 0.798
CN09_17870
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.594
CN09_05380
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
       0.576
CN09_04460
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.512
CN09_05350
GlcNAc-PI de-N-acetylase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.501
CN09_05370
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.495
CN09_31120
Ribose 5-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
  
 0.477
CN09_28700
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.475
CN09_08700
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
  
     0.446
CN09_01425
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.427
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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