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CN09_05490 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05490" - Glutamate synthase in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
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Databases
Textmining
[Homology]
Score
CN09_05490Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (431 aa)    
Predicted Functional Partners:
CN09_05485
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (138 aa)
         
  0.873
CN09_05825
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (199 aa)
 
     
  0.668
CN09_10375
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5’-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5’-phosphate; In the C-terminal section; belongs to the HTP reductase family (369 aa)
   
        0.657
CN09_33960
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (165 aa)
   
          0.651
CN09_27105
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (165 aa)
   
          0.651
CN09_20310
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane (172 aa)
   
          0.650
CN09_05480
Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method- Protein Homology (295 aa)
         
  0.607
CN09_07110
Glycerol acyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (279 aa)
 
          0.605
CN09_04795
Methyltransferase; Derived by automated computational analysis using gene prediction method- Protein Homology (228 aa)
 
 
 
  0.600
CN09_03180
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (111 aa)
   
          0.576
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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