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CN09_05550 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05550" - TetR family transcriptional regulator in Agrobacterium rhizogenes
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05550TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (219 aa)    
Predicted Functional Partners:
ilvC
Ketol-acid reductoisomerase (NADP(+)); Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate; Belongs to the ketol-acid reductoisomerase family (339 aa)
              0.908
CN09_05545
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (302 aa)
         
  0.596
CN09_17455
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (317 aa)
 
     
  0.565
CN09_10920
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (255 aa)
   
          0.559
CN09_05270
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (1234 aa)
   
          0.542
CN09_07155
Phospholipase; Derived by automated computational analysis using gene prediction method- Protein Homology (298 aa)
   
          0.537
CN09_10445
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (395 aa)
   
          0.527
CN09_07005
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (329 aa)
 
          0.524
CN09_10415
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (152 aa)
   
          0.505
CN09_28005
Outer membrane lipoprotein omp19; Derived by automated computational analysis using gene prediction method- Protein Homology (177 aa)
   
          0.497
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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