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CN09_05605 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05605" - Endonuclease in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05605Endonuclease; Derived by automated computational analysis using gene prediction method- Protein Homology (370 aa)    
Predicted Functional Partners:
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP (520 aa)
              0.955
CN09_17085
Pyruvate, phosphate dikinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the PEP-utilizing enzyme family (888 aa)
              0.912
CN09_05610
DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method- Protein Homology (250 aa)
              0.901
CN09_04090
dTDP-glucose 4,6-dehydratase; Derived by automated computational analysis using gene prediction method- Protein Homology (663 aa)
   
   
  0.801
CN09_16525
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (63 aa)
 
     
  0.789
CN09_01595
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (74 aa)
   
          0.766
slyX
Protein SlyX homolog; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the SlyX family (69 aa)
   
          0.754
CN09_27895
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (127 aa)
   
          0.753
CN09_06475
Signal peptide protein; Derived by automated computational analysis using gene prediction method- Protein Homology (183 aa)
   
          0.752
CN09_06455
Peptidase; Derived by automated computational analysis using gene prediction method- Protein Homology (206 aa)
   
          0.748
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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