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CN09_05690 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05690" - LysR family transcriptional regulator in Agrobacterium rhizogenes
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
CN09_05690LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)    
Predicted Functional Partners:
CN09_05685
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (81 aa)
              0.622
CN09_13580
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
          0.589
CN09_18425
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (304 aa)
   
          0.588
CN09_05695
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (153 aa)
              0.582
CN09_14345
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (291 aa)
   
     
  0.508
CN09_05680
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (68 aa)
              0.478
CN09_31265
Transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (305 aa)
   
          0.474
CN09_01825
Glutamate synthase; Derived by automated computational analysis using gene prediction method- Protein Homology (1574 aa)
         
  0.472
CN09_01520
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (297 aa)
   
          0.440
CN09_05675
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology (339 aa)
 
     
  0.429
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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