STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05825Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology (199 aa)    
Predicted Functional Partners:
CN09_05820
Cobalamin biosynthesis protein CobN; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.851
CN09_05830
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
       0.851
CN09_05815
Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology
       0.843
CN09_05810
Bifunctional adenosylcobalamin biosynthesis protein; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate; Belongs to the CobU/CobP family
       0.842
CN09_03955
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
     0.749
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
     
 0.732
CN09_20310
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
 
     0.712
CN09_33960
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
 
     0.711
CN09_27105
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
 
     0.708
CN09_08645
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology
 
   
 0.687
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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