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CN09_05930 protein (Agrobacterium rhizogenes) - STRING interaction network
"CN09_05930" - Zinc transporter in Agrobacterium rhizogenes
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CN09_05930Zinc transporter; Derived by automated computational analysis using gene prediction method- Protein Homology (313 aa)    
Predicted Functional Partners:
znuC
Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family (289 aa)
 
   
  0.996
CN09_05940
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (275 aa)
 
   
  0.989
CN09_05945
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the Fur family (132 aa)
 
   
  0.935
macB
Macrolide export ATP-binding/permease protein MacB; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides (651 aa)
   
        0.902
CN09_01510
Nickel/cobalt efflux system; Derived by automated computational analysis using gene prediction method- Protein Homology; Belongs to the NiCoT transporter (TC 2.A.52) family (367 aa)
 
     
  0.792
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (1000 aa)
              0.758
CN09_28635
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method- Protein Homology (213 aa)
 
     
  0.750
CN09_14410
Probable protein kinase UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis (524 aa)
              0.744
CN09_33890
Membrane protein; Derived by automated computational analysis using gene prediction method- Protein Homology (281 aa)
   
  0.713
CN09_05925
Uncharacterized protein; Derived by automated computational analysis using gene prediction method- Protein Homology (401 aa)
   
   
  0.697
Your Current Organism:
Agrobacterium rhizogenes
NCBI taxonomy Id: 359
Other names: A. rhizogenes, ATCC 11325, Agrobacterium biovar 2, Agrobacterium genomic group 10, Agrobacterium genomic species 10, Agrobacterium genomosp. 10, Agrobacterium rhizogenes, Agrobacterium rhizogenes (RI plasmid PRI1724), Agrobacterium rhizogenes (RI plasmid PRI8196), Agrobacterium rhizogenes (RI plasmid PRIA4B), CFBP 5520, CIP 104328, DSM 30148, ICMP 5794, IFO 13257, JCM 20919, LMG 150, NBRC 13257, NCPPB 2991, Rhizobium rhizogenes, Rhizobium sp. LMG 9509
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